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Tag: workshop

Python 3 for scientists course and other didactic materials at SixthResearcher

I want to share with you the new section of Didactic Materials at the Sixth Researcher website.

In this section I will include courses, presentations, workshops and other materials that I prepared and could be useful for other researchers.

At the moment you can download 10 lessons with the fundamentals of Python 3 for biologists and other scientists that I imparted at UAM.

Also is available a Metabarcoding workshop with the fundamentals of the technique and a practical example explaining the bioinformatics analysis of the data.

The didactic materials in this new section will be licensed as Creative Commons Attribution-NonCommercial.

Python for Scientists

Materials from the course Basic Python 3 Programming for Scientists imparted at Adam Mickiewicz University:

Metabarcoding Bioinformatics analysis

Materials from the workshop Introduction to Bioinformatics analysis of Metabarcoding data:


Metagenomics workshop in Evora

I want to announce that on 19th October I’ll teach the workshop titled “Introduction to Bioinformatics applied to Metagenomics and Community Ecology” during the conference Community Ecology for the 21st Century (√Čvora, Portugal).

In this workshop I’ll introduce the new tool called AmpliTAXO that allows an online, easy and automated analysis of NGS data from ribosomal RNA and other genetic markers used in metagenomics.

If you are interested, you can contact here with the conference organizers to join the workshop or the full conference, there are still available places in the workshop.

The workshop will consist in two modules, in the first, will be exposed the metagenomics fundamentals, challenges, the technical advances of the high-throughput sequencing techniques and the analysis pipeline of the most used tools (UPARSE, QIIME, MOTHUR). The second part will be practical and we will perform an analysis of real metagenomic data from NGS experiments.

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